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Introducing k-mers: sequences of length k

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In this video I will introduce the concept of

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Introduction to k-mers

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Dr. Rob Edwards from San Diego State University gives an introduction to nucleotide and amino acid

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Introduction on counting k-mers

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Dr. Rob Edwards from San Diego State University provides an introduction on counting

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Minimizers for efficient k-mer storage

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This discusses how minimizers are identified to represent sets of

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BOSC 2021 lightning talk: sourmash protein k-mers for large-scale sequence analysis

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Focuses on our current efforts for microbial taxonomic classification https://github.com/sourmash-bio/sourmash.

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This video introduces unsupervised learning, supervised learning, and core data structures used in

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Introduction to K mer spectra analysis by Kamil S. Jaron & Lucía Campos-Dominguez

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First video of day 2 - where we delve deep into

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DNA indexing with k-mers

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I'll review the overall pipeline of variant discovery and explain how to create a DNA index with

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... drawback to a camera-

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... have and the the size of the overlaps and with that we develop also a

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Counting k-mers with Bloom filters

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Dr. Rob Edwards from San Diego State University describes how we can use the Bloom filter to efficiently weed out

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Presentation by Israt Nisa (LBNL at the time, now at Amazon AWS AI) for the IPDPS'21 paper Israt Nisa, Prashant Pandey, ...

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David Koslicki "Multi-resolution k-mer classification of metagenomic samples"

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Thursday July 12, 2018 Big Bear lake Retreat Computational Genomics Summer Institute.

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